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Write reviewed SSSOM mapping sets into a Salmon Data Package

Source: R/sssom.R
write_sdp_sssom.Rd

Writes explicitly supplied SSSOM 1.1 mapping sets under metadata/semantic/ and records their paths, hashes, row counts, source versions, licenses, and writer provenance in metadata/semantic/mapping-sets.json. Bytes and manifest ordering are deterministic. This function does not turn semantic suggestions or variable decompositions into mappings; mapping_sets = NULL is therefore a no-op.

Usage

write_sdp_sssom(path, mapping_sets = NULL, overwrite = FALSE)

Arguments

path

Existing Salmon Data Package directory.

mapping_sets

NULL, one or more paths to reviewed .sssom.tsv files, or parsed objects returned by read_sssom_mapping_set().

overwrite

Logical; replace files managed by this writer when TRUE.

Value

The manifest path, invisibly, or NULL when mapping_sets is NULL.